Package: POINT 1.3
POINT: Protein Structure Guided Local Test
Provides an implementation of a rare variant association test that utilizes protein tertiary structure to increase signal and to identify likely causal variants. Performs structure-guided collapsing, which leads to local tests that borrow information from neighboring variants on a protein and that provide association information on a variant-specific level. For details of the implemented method see West, R. M., Lu, W., Rotroff, D. M., Kuenemann, M., Chang, S-M., Wagner M. J., Buse, J. B., Motsinger-Reif, A., Fourches, D., and Tzeng, J-Y. (2019) <doi:10.1371/journal.pcbi.1006722>.
Authors:
POINT_1.3.tar.gz
POINT_1.3.zip(r-4.5)POINT_1.3.zip(r-4.4)POINT_1.3.zip(r-4.3)
POINT_1.3.tgz(r-4.4-any)POINT_1.3.tgz(r-4.3-any)
POINT_1.3.tar.gz(r-4.5-noble)POINT_1.3.tar.gz(r-4.4-noble)
POINT_1.3.tgz(r-4.4-emscripten)POINT_1.3.tgz(r-4.3-emscripten)
POINT.pdf |POINT.html✨
POINT/json (API)
NEWS
| # Install 'POINT' in R: |
| install.packages('POINT', repos = c('https://sth1402.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 1 years agofrom:1f5de2f039. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 29 2024 |
| R-4.5-win | OK | Oct 29 2024 |
| R-4.5-linux | OK | Oct 29 2024 |
| R-4.4-win | OK | Oct 29 2024 |
| R-4.4-mac | OK | Oct 29 2024 |
| R-4.3-win | OK | Oct 29 2024 |
| R-4.3-mac | OK | Oct 29 2024 |
Exports:point
Dependencies:CompQuadFormlatticeMatrixrARPACKRcppRcppEigenRSpectra
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Protein Structure Guided Local Test | point |
