modelObj: A Model Object Framework for Regression Analysis1 years ago
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An Introduction to CNVreg Package to Perform Copy Number Variant Association Analysis with Penalied Regression1 years ago
Introduction | Data | Toy Datasets | CNV | COV | Y_QT | Y_BT | Data preprocessing | Input of function prep() | Output of function prep() | Application of prep() function | Application 1: Process CNV, Cov, and a continuous trait Y_QT | Application 2: Process CNV, Cov, and a binary trait Y_BT | Analysis with cross-validation (CV) | CNV association analysis for a continuous outcome | Input of function cvfit_WTSMTH() | Output of function cvfit_WTSMTH() | CNV association analysis for a binary outcome | Analysis with fixed tuning parameters | Input of function fit_WTSMTH() | Output of fit_WTSMTH()
POSTm: Phylogeney-Guided OTU-Specific Association Test for Microbiome Data2 years ago
Introduction | Functions | \textit | \textit | \textit | \textit | Examples | Example 1 | Example 2 | Example 3 | Example 4 | Example 5
iDOVE -- $\text{\underline{D}}$urability $\text{\underline{O}}$f $\text{\underline{V}}$accine $\text{\underline{E}}$fficacy Against SARS-CoV-2 $\text{\underline{I}}$nfection2 years ago
Introduction | Functions | \textit | \textit | \textit | \textit | Examples | changePts: | performing nonparametric maximum likelihood | Iteration 100 : difference = 0.000140 | EM algorithm converged after 118 iterations | Number of subjects: 40000 | Number of unique time points: 313 | Log-likelihood at final estimates: -10880.11 | PL converged after 2 iterations | constantVE selected | changePts not given; using AIC to select from | evaluating change point: 28 | EM algorithm converged after 28 iterations | evaluating change point: 35 | EM algorithm converged after 29 iterations | evaluating change point: 42 | evaluating change point: 49 | EM algorithm converged after 30 iterations | evaluating change point: 56 | Day 28 (week 4) was selected as the change point by AIC | Partial log-likelihood at final estimates: -10909.76 | PL converged after 1 iterations
\textbf{DOVE -- \underline{D}urability \underline{O}f \underline{V}accine \underline{E}fficacy}2 years ago
\textit | \textit | \textit | tau = 320 | timePts not given; default values will be used | method converged after 13 iterations
contTimeCausal - Continuous Time Causal Models5 years ago
Introduction | Functions | \textit | \textit | \textit | Examples
