{
  "_id": "6a58938eff0138dec5d7555d",
  "Package": "POINT",
  "Type": "Package",
  "Title": "Protein Structure Guided Local Test",
  "Version": "1.4",
  "Date": "2025-05-03",
  "Author": "Rachel Marceau West [aut], Shannon T. Holloway [aut, cre]",
  "Maintainer": "Shannon T. Holloway <shannon.t.holloway@gmail.com>",
  "Authors@R": "c(person(given = c(\"Rachel\", \"Marceau\"),\nfamily = \"West\",\nrole = \"aut\"),\nperson(given = c(\"Shannon\", \"T.\"),\nfamily = \"Holloway\",\nrole = c(\"aut\", \"cre\"),\nemail = \"shannon.t.holloway@gmail.com\"))",
  "Description": "Provides an implementation of a rare variant association\ntest that utilizes protein tertiary structure to increase\nsignal and to identify likely causal variants. Performs\nstructure-guided collapsing, which leads to local tests that\nborrow information from neighboring variants on a protein and\nthat provide association information on a variant-specific\nlevel. For details of the implemented method see West, R. M.,\nLu, W., Rotroff, D. M., Kuenemann, M., Chang, S-M., Wagner M.\nJ., Buse, J. B., Motsinger-Reif, A., Fourches, D., and Tzeng,\nJ-Y. (2019) <doi:10.1371/journal.pcbi.1006722>.",
  "License": "GPL-2",
  "NeedsCompilation": "no",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.1",
  "Collate": "'A_Kernel.R' 'A_BurdenKernel.R' 'A_LinearKernel.R'\n'A_PolyKernel.R' 'B_PvMethod.R' 'B_PvMethod_Davies.R'\n'B_PvMethod_Liu.R' 'C_BinomialTrait.R' 'C_GaussianTrait.R'\n'D_NullResult.R' 'calcLocalKernel.R' 'distanceMatrix.R'\n'mainCode.R' 'point.R' 'pvResamp.R'",
  "Packaged": {
    "Date": "2026-07-16 08:14:29 UTC",
    "User": "root"
  },
  "Repository": "https://sth1402.r-universe.dev",
  "Date/Publication": "2025-05-04 13:40:02 UTC",
  "RemoteUrl": "https://github.com/cran/POINT",
  "RemoteRef": "HEAD",
  "RemoteSha": "508a5b376d5fa62b44af907a507fa0d88222260c",
  "_user": "sth1402",
  "_type": "src",
  "_file": "POINT_1.4.tar.gz",
  "_fileid": "https://r2.ropensci.org/ee3fb4ae7100c76b41b831434908212c6e86b9d73dc911cc62e16e97c0cdef80",
  "_filesize": 93400,
  "_sha256": "ee3fb4ae7100c76b41b831434908212c6e86b9d73dc911cc62e16e97c0cdef80",
  "_expires": "2026-10-24T08:17:16.000Z",
  "_created": "2026-07-16T08:14:29.000Z",
  "_published": "2026-07-16T08:17:18.060Z",
  "_jobs": [
    {
      "job": 87570101542,
      "time": 121,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8369195891"
    },
    {
      "job": 87570101536,
      "time": 126,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8369197768"
    },
    {
      "job": 87570101593,
      "time": 121,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8369195767"
    },
    {
      "job": 87570101546,
      "time": 97,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8369186309"
    },
    {
      "job": 87569582957,
      "time": 159,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8369146185"
    },
    {
      "job": 87570101494,
      "time": 92,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8369185145"
    },
    {
      "job": 87570101595,
      "time": 109,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8369191814"
    },
    {
      "job": 87570101541,
      "time": 103,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8369188829"
    },
    {
      "job": 87570101521,
      "time": 81,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8369180358"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/sth1402/actions/runs/29482588877",
  "_status": "success",
  "_upstream": "https://github.com/cran/POINT",
  "_commit": {
    "id": "508a5b376d5fa62b44af907a507fa0d88222260c",
    "author": "Shannon T. Holloway <shannon.t.holloway@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.4\n",
    "time": 1746366002
  },
  "_maintainer": {
    "name": "Shannon T. Holloway",
    "email": "shannon.t.holloway@gmail.com",
    "login": "sth1402",
    "description": "",
    "uuid": 41195707
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "rARPACK",
      "role": "Depends"
    },
    {
      "package": "Matrix",
      "role": "Depends"
    },
    {
      "package": "CompQuadForm",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "sth1402",
      "count": 3,
      "uuid": 41195707
    }
  ],
  "_userbio": {
    "uuid": 41195707,
    "type": "user",
    "name": "sth1402",
    "followers": 1
  },
  "_downloads": {
    "count": 405,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/POINT"
  },
  "_mentions": 19,
  "_searchresults": 5,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/POINT.html",
    "manual.pdf"
  ],
  "_realowner": "sth1402",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.1",
      "date": "2019-03-08"
    },
    {
      "version": "1.2",
      "date": "2022-06-07"
    },
    {
      "version": "1.3",
      "date": "2023-10-01"
    },
    {
      "version": "1.4",
      "date": "2025-05-04"
    }
  ],
  "_exports": [
    "point"
  ],
  "_help": [
    {
      "page": "point",
      "title": "Protein Structure Guided Local Test",
      "topics": [
        "point"
      ]
    }
  ],
  "_rundeps": [
    "CompQuadForm",
    "lattice",
    "Matrix",
    "rARPACK",
    "Rcpp",
    "RcppEigen",
    "RSpectra"
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "point",
  "_universes": [
    "sth1402"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.4",
      "date": "2026-07-16T08:16:23.000Z",
      "distro": "resolute",
      "commit": "508a5b376d5fa62b44af907a507fa0d88222260c",
      "fileid": "https://r2.ropensci.org/bbd53d313a1039e15e2e17bd37639ee69d42949d4793db3b42c71faa06100791",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/29482588877"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.4",
      "date": "2026-07-16T08:16:24.000Z",
      "distro": "resolute",
      "commit": "508a5b376d5fa62b44af907a507fa0d88222260c",
      "fileid": "https://r2.ropensci.org/9456ddf865aedbc163a930ff9bb3a7e995e518055ce86ed631072898c7db8516",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/29482588877"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.4",
      "date": "2026-07-16T08:16:42.000Z",
      "commit": "508a5b376d5fa62b44af907a507fa0d88222260c",
      "fileid": "https://r2.ropensci.org/a9e0d31f4f12cdae42f5804de1d18dff12a2efb244db723c17258fd55dd48a11",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/29482588877"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.4",
      "date": "2026-07-16T08:16:02.000Z",
      "commit": "508a5b376d5fa62b44af907a507fa0d88222260c",
      "fileid": "https://r2.ropensci.org/a8d90055b68d9c40968c63c4217a36ac3e576514881f414871f31e45e4a04673",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/29482588877"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.4",
      "date": "2026-07-16T08:16:17.000Z",
      "commit": "508a5b376d5fa62b44af907a507fa0d88222260c",
      "fileid": "https://r2.ropensci.org/2600f68d981541d108897ffb2c91f2d018089077925ac2b350a04f8dbe9572db",
      "status": "success",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/29482588877"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.4",
      "date": "2026-07-16T08:16:10.000Z",
      "commit": "508a5b376d5fa62b44af907a507fa0d88222260c",
      "fileid": "https://r2.ropensci.org/9867f102420c5b95d898acd8f0e9286344f473fd8bee84c027e37a9a961d073b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/29482588877"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.4",
      "date": "2026-07-16T08:15:59.000Z",
      "commit": "508a5b376d5fa62b44af907a507fa0d88222260c",
      "fileid": "https://r2.ropensci.org/1dd3f3d85ce94e82f5f61b90cef91b31f2ae19bfe805a290363f87c44d90ee37",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/29482588877"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.4",
      "date": "2026-07-16T08:15:36.000Z",
      "commit": "508a5b376d5fa62b44af907a507fa0d88222260c",
      "fileid": "https://r2.ropensci.org/5ca241421e20d229f5cff9c17a3a944a6f6f92007054521bf25f8ecc8acc2af7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/29482588877"
    }
  ]
}