Package: baclava 1.1
baclava: Bayesian Analysis of Cancer Latency with Auxiliary Variable Augmentation
A novel data-augmentation Markov chain Monte Carlo sampling algorithm to fit a progressive compartmental model of disease in a Bayesian framework Morsomme, R.N., Holloway, S.T., Ryser, M.D. and Xu J. (2024) <doi:10.48550/arXiv.2408.14625>.
Authors:
baclava_1.1.tar.gz
baclava_1.1.zip(r-4.7-x86_64)baclava_1.1.zip(r-4.6-x86_64)baclava_1.1.zip(r-4.5-x86_64)
baclava_1.1.tgz(r-4.6-x86_64)baclava_1.1.tgz(r-4.6-arm64)baclava_1.1.tgz(r-4.5-x86_64)baclava_1.1.tgz(r-4.5-arm64)
baclava_1.1.tar.gz(r-4.7-arm64)baclava_1.1.tar.gz(r-4.7-x86_64)baclava_1.1.tar.gz(r-4.6-arm64)baclava_1.1.tar.gz(r-4.6-x86_64)
baclava_1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
baclava/json (API)
| # Install 'baclava' in R: |
| install.packages('baclava', repos = c('https://sth1402.r-universe.dev', 'https://cloud.r-project.org')) |
- all_cause_rates - All Cause Mortality Rates
- data.clinical - Toy Dataset
- data.screen - Toy Dataset
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:c4c03e4917. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 179 | ||
| linux-devel-x86_64 | OK | 182 | ||
| source / vignettes | OK | 268 | ||
| linux-release-arm64 | OK | 194 | ||
| linux-release-x86_64 | OK | 206 | ||
| macos-release-arm64 | OK | 103 | ||
| macos-release-x86_64 | OK | 268 | ||
| macos-oldrel-arm64 | OK | 148 | ||
| macos-oldrel-x86_64 | OK | 218 | ||
| windows-devel | OK | 153 | ||
| windows-release | OK | 149 | ||
| windows-oldrel | OK | 201 | ||
| wasm-release | OK | 138 |
Exports:aloocvcohortODXfit_baclavapredictODX
Dependencies:clicodacodetoolscpp11doParalleldplyrfarverforeachgenericsggplot2gluegtableisobanditeratorslabelinglatticelifecyclemagrittrpillarpkgconfigpurrrR6RColorBrewerRcppRcppEigenRcppNumericalrlangS7scalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| All Cause Mortality Rates | all_cause_rates |
| Approximate Leave-One-Out Cross-Validation | aloocv |
| Cohort-specific Overdiagnosis | cohortODX |
| Bayesian Analysis of Cancer Latency with Auxiliary Variable Augmentation | fit_baclava print.baclava summary.baclava |
| Plot Posterior Distribution Parameters | plot.baclava |
| Estimate the Overall and Per Screen Overdiagnosis Rates | plot.baclava.ODX.pred predictODX |
| Toy Dataset | data.clinical data.screen screen_data |
