Package: POSTm 1.4
POSTm: Phylogeny-Guided OTU-Specific Association Test for Microbiome Data
Implements the Phylogeny-Guided Microbiome OTU-Specific Association Test method, which boosts the testing power by adaptively borrowing information from phylogenetically close OTUs (operational taxonomic units) of the target OTU. This method is built on a kernel machine regression framework and allows for flexible modeling of complex microbiome effects, adjustments for covariates, and can accommodate both continuous and binary outcomes.
Authors:
POSTm_1.4.tar.gz
POSTm_1.4.zip(r-4.5)POSTm_1.4.zip(r-4.4)POSTm_1.4.zip(r-4.3)
POSTm_1.4.tgz(r-4.4-any)POSTm_1.4.tgz(r-4.3-any)
POSTm_1.4.tar.gz(r-4.5-noble)POSTm_1.4.tar.gz(r-4.4-noble)
POSTm_1.4.tgz(r-4.4-emscripten)POSTm_1.4.tgz(r-4.3-emscripten)
POSTm.pdf |POSTm.html✨
POSTm/json (API)
NEWS
| # Install 'POSTm' in R: |
| install.packages('POSTm', repos = c('https://sth1402.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 months agofrom:9a0a0dc855. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 15 2024 |
| R-4.5-win | WARNING | Sep 15 2024 |
| R-4.5-linux | WARNING | Sep 15 2024 |
| R-4.4-win | WARNING | Sep 15 2024 |
| R-4.4-mac | WARNING | Sep 15 2024 |
| R-4.3-win | WARNING | Sep 15 2024 |
| R-4.3-mac | WARNING | Sep 15 2024 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Adjust P-values for Multiple Comparisons | p.adjust p.adjust.POST |
| Plot Phylogenies with Significant OTU | plot plot.POST |
| Phylogeney-Guided OTU-Specific Association Test for Microbiome Data | post |
| Example Dataset For Illustration | metadata otu otuseq otutree POSTmData |
| Print the Primary Results of a post() Analysis | print print.POST |
