{
  "_id": "6aca4828fe5cc25786e8688f",
  "Package": "VEwaningVariant",
  "Type": "Package",
  "Title": "Vaccine Efficacy Over Time - Variant Aware",
  "Version": "1.4",
  "Date": "2023-12-11",
  "Authors@R": "c(person(\"Marie\", \"Davidian\", role = \"aut\"),\nperson(\"A.A.\", \"Tsiatis\", role = \"aut\"),\nperson(\"Shannon T.\", \"Holloway\", role = c(\"aut\", \"cre\"),\nemail = \"shannon.t.holloway@gmail.com\"))",
  "Description": "Implements methods for inference on potential waning of\nvaccine efficacy and for estimation of vaccine efficacy at a\nuser-specified time after vaccination based on data from a\nrandomized, double-blind, placebo-controlled vaccine trial in\nwhich participants may be unblinded and placebo subjects may be\ncrossed over to the study vaccine.  The methods also for\nvariant stratification and allow adjustment for possible\nconfounding via inverse probability weighting through\nspecification of models for the trial entry process, unblinding\nmechanisms, and the probability an unblinded placebo\nparticipant accepts study vaccine.",
  "License": "GPL-2",
  "NeedsCompilation": "yes",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.3",
  "Collate": "'RcppExports.R' 'censorFit.R' 'confirmIntegerLike.R' 'pzero.R'\n'survFunc.R' 'entryFit.R' 'esttheta.R' 'fitCensor.R' 'psiFit.R'\n'unblindFit.R' 'fitERPsi.R' 'gFunc_v.R'\n'plot.VEwaningVariant.R' 'print.VEwaningVariant.R' 'variant.R'\n'variantData.R' 've.R' 'verifyPhase.R' 'verifyModels.R'\n'verifyInputs.R' 'veWaningVariant.R'",
  "Packaged": {
    "Date": "2026-10-10 13:59:26 UTC",
    "User": "root"
  },
  "Author": "Marie Davidian [aut], A.A. Tsiatis [aut], Shannon T. Holloway\n[aut, cre]",
  "Maintainer": "Shannon T. Holloway <shannon.t.holloway@gmail.com>",
  "Repository": "https://sth1402.r-universe.dev",
  "Date/Publication": "2023-12-14 02:37:54 UTC",
  "RemoteUrl": "https://github.com/cran/VEwaningVariant",
  "RemoteRef": "HEAD",
  "RemoteSha": "b1023c5020606da87e171bcb7fb784309f004671",
  "_user": "sth1402",
  "_type": "src",
  "_file": "VEwaningVariant_1.4.tar.gz",
  "_fileid": "https://r2.ropensci.org/3e2d6f72e3e955e538c0cc9bdb9b3655a8deb00409ae22ee39e366c84e584b58",
  "_filesize": 741410,
  "_sha256": "3e2d6f72e3e955e538c0cc9bdb9b3655a8deb00409ae22ee39e366c84e584b58",
  "_expires": "2027-01-18T14:13:58.000Z",
  "_created": "2026-10-10T13:59:26.000Z",
  "_published": "2026-10-10T14:14:00.572Z",
  "_buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 114230055358,
      "time": 133,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11671984432"
    },
    {
      "job": 114230055306,
      "time": 162,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11671969492"
    },
    {
      "job": 114230055323,
      "time": 136,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11672019359"
    },
    {
      "job": 114230055322,
      "time": 157,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11671103438"
    },
    {
      "job": 114230055291,
      "time": 113,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11672375660"
    },
    {
      "job": 114230055360,
      "time": 294,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11672520433"
    },
    {
      "job": 114230055371,
      "time": 140,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11671664002"
    },
    {
      "job": 114230055351,
      "time": 376,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11672450657"
    },
    {
      "job": 114229317882,
      "time": 239,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11671578021"
    },
    {
      "job": 114230055261,
      "time": 101,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11671578186"
    },
    {
      "job": 114230055315,
      "time": 277,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11671298467"
    },
    {
      "job": 114230055311,
      "time": 218,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11672365052"
    },
    {
      "job": 114230055331,
      "time": 135,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11671574655"
    },
    {
      "job": 114230055349,
      "time": 260,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11671709864"
    },
    {
      "job": 114230055470,
      "time": 234,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11670968781"
    }
  ],
  "_upstream": "https://github.com/cran/VEwaningVariant",
  "_commit": {
    "id": "b1023c5020606da87e171bcb7fb784309f004671",
    "author": "Shannon T. Holloway <shannon.t.holloway@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.4\n",
    "time": 1702521474
  },
  "_maintainer": {
    "name": "Shannon T. Holloway",
    "email": "shannon.t.holloway@gmail.com",
    "login": "sth1402",
    "description": "",
    "uuid": 41195707
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "survival",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "graphics",
      "role": "Depends"
    },
    {
      "package": "ggplot2",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "Depends"
    },
    {
      "package": "RcppArmadillo",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "sth1402",
      "count": 2,
      "uuid": 41195707
    }
  ],
  "_userbio": {
    "uuid": 41195707,
    "type": "user",
    "name": "sth1402",
    "followers": 1
  },
  "_downloads": {
    "count": 342,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/VEwaningVariant"
  },
  "_searchresults": 0,
  "_topics": [
    "openblas",
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/VEwaningVariant.html"
  ],
  "_realowner": "sth1402",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.1",
      "date": "2021-11-04"
    },
    {
      "version": "1.2",
      "date": "2022-01-17"
    },
    {
      "version": "1.3",
      "date": "2022-06-07"
    },
    {
      "version": "1.4",
      "date": "2023-12-14"
    }
  ],
  "_exports": [
    "ve",
    "veWaningVariant"
  ],
  "_datasets": [
    {
      "name": "variantData",
      "title": "Toy Dataset For Illustration",
      "object": "variantData",
      "file": "variantData.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ID",
        "X1",
        "X2",
        "E",
        "A",
        "U",
        "Delta",
        "R",
        "Gam",
        "Psi"
      ],
      "rows": 30000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "plot",
      "title": "Plot Analysis Results",
      "topics": [
        "plot",
        "plot.VEwaningVariant"
      ]
    },
    {
      "page": "print",
      "title": "Print Analysis Results",
      "topics": [
        "print",
        "print.VEwaningVariant"
      ]
    },
    {
      "page": "variantData",
      "title": "Toy Dataset For Illustration",
      "topics": [
        "variantData"
      ]
    },
    {
      "page": "ve",
      "title": "Retrieve the Estimated Vaccine Efficacy",
      "topics": [
        "ve"
      ]
    },
    {
      "page": "veWaningVariant",
      "title": "Estimation of Vaccine Efficacy Over Time - Variant Aware",
      "topics": [
        "veWaningVariant"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "cpp11",
    "farver",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "Matrix",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "rlang",
    "S7",
    "scales",
    "survival",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.32+ds-5",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "vewaningvariant",
  "_universes": [
    "sth1402"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.4",
      "date": "2026-10-10T14:01:40.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/271ccbfdc27baecb3fefddfa89724e62b79e5d912f648a477dbb516e7ef6080f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.4",
      "date": "2026-10-10T14:02:33.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/98dc6d3ae1946f7e17d46de446df1242e0a20128edbbef126d5e14e58e79ecae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.4",
      "date": "2026-10-10T14:01:44.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/38490952f7d1c5cffeccb1e58384a5e082bf3d9baaf16b3a4895673d2fae320a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.4",
      "date": "2026-10-10T14:02:20.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/7eb83adc22945c5e35aa5ef4f3ffa872366e31eb40e6e738a0855a0aa2819e6d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.4",
      "date": "2026-10-10T14:09:26.000Z",
      "arch": "aarch64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/e1b0adacb5a1fa5d5c74fb703af4b4cd258e1f2185171103bb37b648a1afb568",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.4",
      "date": "2026-10-10T14:07:38.000Z",
      "arch": "x86_64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/8b0734ec6bad8762ee5f9793bb29da4d356e988c8fa877214b04fde302800d45",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.4",
      "date": "2026-10-10T14:12:35.000Z",
      "arch": "aarch64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/1eb5cb220f359302a3f4bad326e6335976e2e83e97979df2d137822d429dca61",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.4",
      "date": "2026-10-10T14:08:07.000Z",
      "arch": "x86_64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/3547427ae127a38fb0e29bf9d874336f37ad9aa8961bdc438735150723ca6134",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.4",
      "date": "2026-10-10T14:02:11.000Z",
      "arch": "emscripten",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/c72de63c0b307af16f83e674cf1839bd2dac0b5a94650241a0c4c825a4d4a1de",
      "status": "success",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.4",
      "date": "2026-10-10T14:03:27.000Z",
      "arch": "aarch64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/c04d741ed25e3aafcdb7a6de1f8b53c59782abef050386ffa285a68b518826d0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.4",
      "date": "2026-10-10T14:01:20.000Z",
      "arch": "x86_64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/199532484f242a7774da21d4278d71f86d0965b2a0d6f4492b6730d56705a15f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.4",
      "date": "2026-10-10T14:01:17.000Z",
      "arch": "x86_64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/db789e3dae9bbcd7c69316240709f6bd7bda2aca5bf557c531e9cd6866d1e01d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.4",
      "date": "2026-10-10T14:03:12.000Z",
      "arch": "aarch64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/a6ab32946b124c7deb96315865c11466a81bdf54ccbbce49e582a442e0ceb4c7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.4",
      "date": "2026-10-10T14:01:19.000Z",
      "arch": "x86_64",
      "commit": "b1023c5020606da87e171bcb7fb784309f004671",
      "fileid": "https://r2.ropensci.org/16fcd60180c31d07567093a12a1ca4b6b149f925f354ee621ab06fbdb673100f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38057642956"
    }
  ]
}