{
  "_id": "6a1eef9db401979e73412c19",
  "Package": "DOVE",
  "Type": "Package",
  "Title": "Durability of Vaccine Efficacy",
  "Version": "1.11",
  "Date": "2025-12-20",
  "Authors@R": "c(person(\"Danyu\", \"Lin\", role = \"aut\"),\nperson(\"Yu\", \"Gu\", role = \"aut\"),\nperson(\"Donglin\", \"Zeng\", role = \"aut\"),\nperson(\"Shannon T.\", \"Holloway\", role = c(\"aut\", \"cre\"),\nemail = \"shannon.t.holloway@gmail.com\"))",
  "Description": "Implements maximum likelihood methods for evaluating the\ndurability of vaccine efficacy in a randomized,\nplacebo-controlled clinical trial with staggered enrollment of\nparticipants and potential crossover of placebo recipients\nbefore the end of the trial. Lin, D. Y., Zeng, D., and Gilbert,\nP. B. (2021) <doi:10.1093/cid/ciab226> and Lin, D. Y., Gu, Y.,\nZeng, D., Janes, H. E., and Gilbert, P. B. (2021)\n<doi:10.1093/cid/ciab630>.",
  "License": "GPL-2",
  "VignetteBuilder": "utils, knitr",
  "NeedsCompilation": "yes",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.3",
  "Collate": "'VEplot_type2.R' 'VEcal.R' 'postProcess.R' 'CoxReg.R'\n'RcppExports.R' 'VEplot_type1.R' 'postInterval.R' 'postBeta.R'\n'infBeta.R' 'postProcessDove.R' 'scores.R' 'loc.R' 'vcFit.R'\n'verifyInputs.R' 'dove.R' 'dove2.R' 'doveData.R' 'iterations.R'\n'plot.DOVE.R' 'postVE.R' 'print.DOVE.R' 'vaccine.R'",
  "Author": "Danyu Lin [aut], Yu Gu [aut], Donglin Zeng [aut], Shannon T.\nHolloway [aut, cre]",
  "Maintainer": "Shannon T. Holloway <shannon.t.holloway@gmail.com>",
  "Packaged": {
    "Date": "2026-05-19 08:37:37 UTC",
    "User": "root"
  },
  "Repository": "https://sth1402.r-universe.dev",
  "Date/Publication": "2025-12-20 15:50:02 UTC",
  "RemoteUrl": "https://github.com/cran/DOVE",
  "RemoteRef": "HEAD",
  "RemoteSha": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
  "MD5sum": "cc7b5d20ae44e76dd37f7eec19b66e37",
  "_user": "sth1402",
  "_type": "src",
  "_file": "DOVE_1.11.tar.gz",
  "_fileid": "14b37bb819c69b5979d8adaaca8a90439e65fc8fad3b67e3e8b7402454f89c7a",
  "_filesize": 666615,
  "_sha256": "14b37bb819c69b5979d8adaaca8a90439e65fc8fad3b67e3e8b7402454f89c7a",
  "_created": "2026-05-19T08:37:37.000Z",
  "_published": "2026-06-02T14:58:37.725Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79101342037,
      "time": 166,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7078759051"
    },
    {
      "job": 79101342022,
      "time": 172,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7078761189"
    },
    {
      "job": 79101341867,
      "time": 156,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7078755807"
    },
    {
      "job": 79101341840,
      "time": 149,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7078752890"
    },
    {
      "job": 79101342517,
      "time": 177,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7078763122"
    },
    {
      "job": 79101342241,
      "time": 254,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7078789502"
    },
    {
      "job": 79101341904,
      "time": 136,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7078748290"
    },
    {
      "job": 79101341515,
      "time": 205,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7078773171"
    },
    {
      "job": 79101322552,
      "time": 293,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7078701046"
    },
    {
      "job": 79101341519,
      "time": 125,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7361422959"
    },
    {
      "job": 79101341322,
      "time": 152,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7078754210"
    },
    {
      "job": 79101342670,
      "time": 152,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7078753986"
    },
    {
      "job": 79101342181,
      "time": 170,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7078761159"
    }
  ],
  "_buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/DOVE",
  "_commit": {
    "id": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
    "author": "Shannon T. Holloway <shannon.t.holloway@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.11\n",
    "time": 1766245802
  },
  "_maintainer": {
    "name": "Shannon T. Holloway",
    "email": "shannon.t.holloway@gmail.com",
    "login": "sth1402",
    "description": "",
    "uuid": 41195707
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "survival",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.4.6",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "RcppArmadillo",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-51",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.11",
      "date": "2025-12-20"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "sth1402",
      "count": 3,
      "uuid": 41195707
    }
  ],
  "_userbio": {
    "uuid": 41195707,
    "type": "user",
    "name": "sth1402"
  },
  "_downloads": {
    "count": 587,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DOVE"
  },
  "_mentions": 16,
  "_searchresults": 0,
  "_topics": [
    "openblas",
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/DOVE.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "sth1402",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.5",
      "date": "2021-03-08"
    },
    {
      "version": "1.6",
      "date": "2021-06-02"
    },
    {
      "version": "1.7",
      "date": "2021-09-06"
    },
    {
      "version": "1.8",
      "date": "2021-10-12"
    },
    {
      "version": "1.9",
      "date": "2022-06-07"
    },
    {
      "version": "1.10",
      "date": "2023-12-14"
    },
    {
      "version": "1.11",
      "date": "2025-12-20"
    }
  ],
  "_exports": [
    "dove",
    "dove2",
    "vaccine"
  ],
  "_datasets": [
    {
      "name": "doveData",
      "title": "Toy Dataset For Illustration",
      "object": "doveData",
      "file": "doveData.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "entry.time",
        "event.time",
        "event.status",
        "vaccine.time",
        "vaccine.status",
        "priority",
        "sex"
      ],
      "rows": 40000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "dove",
      "title": "Durability of Vaccine Efficacy",
      "topics": [
        "dove"
      ]
    },
    {
      "page": "dove2",
      "title": "Durability of Vaccine Efficacy",
      "topics": [
        "dove2"
      ]
    },
    {
      "page": "doveData",
      "title": "Toy Dataset For Illustration",
      "topics": [
        "doveData"
      ]
    },
    {
      "page": "plot",
      "title": "Plot Estimated Vaccine Efficacy",
      "topics": [
        "plot",
        "plot.DOVE"
      ]
    },
    {
      "page": "print",
      "title": "Print the Primary Results of a dove() or dove2() Analysis",
      "topics": [
        "print",
        "print.DOVE"
      ]
    },
    {
      "page": "vaccine",
      "title": "Specify Vaccination Variables and Entry Time",
      "topics": [
        "vaccine"
      ]
    }
  ],
  "_rundeps": [
    "lattice",
    "Matrix",
    "Rcpp",
    "RcppArmadillo",
    "survival"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_vignettes": [
    {
      "source": "dove-vignette.Rmd",
      "filename": "dove-vignette.html",
      "title": "\\textbf{DOVE -- \\underline{D}urability \\underline{O}f \\underline{V}accine \\underline{E}fficacy}",
      "engine": "knitr::rmarkdown",
      "headings": [
        "\\textit",
        "\\textit",
        "\\textit",
        "tau = 320",
        "timePts not given; default values will be used",
        "method converged after 13 iterations"
      ],
      "created": "2021-09-06 16:00:02",
      "modified": "2023-12-14 02:37:10",
      "commits": 2
    }
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "dove",
  "_universes": [
    "sth1402"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.11",
      "date": "2026-05-19T08:40:12.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
      "fileid": "313497c3428c50cf5c5c0f199c5b902f36160be61b23033141b744bc03b85da5",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.11",
      "date": "2026-05-19T08:40:12.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
      "fileid": "c9083ff454218cc8c062545c84e4a461e6e7de418aa9e57533e88cfacae98683",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.11",
      "date": "2026-05-19T08:40:05.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
      "fileid": "31555b54ffca65d8591f8812a61d70ed43d3f034d7158807fbe87c12ae4893a7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.11",
      "date": "2026-05-19T08:39:57.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
      "fileid": "f058e45193e0831c893760b4655137bf6792b10d467a7dd788587514deb128bb",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.11",
      "date": "2026-05-19T08:40:26.000Z",
      "arch": "aarch64",
      "commit": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
      "fileid": "6c2d570b477352c1ebc664715a787468acfb936cc6c04cf5aba339df8c5c97a7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.11",
      "date": "2026-05-19T08:40:55.000Z",
      "arch": "x86_64",
      "commit": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
      "fileid": "dc2e328c8cae14668beb78ff8b5f3556c6cb399050e25714521b25e308109c01",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.11",
      "date": "2026-05-19T08:39:56.000Z",
      "arch": "aarch64",
      "commit": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
      "fileid": "19ca30a7b9377bf44c6f99fe7560eb4799c1511f2bf493ad49f59a6a01fab92a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.11",
      "date": "2026-05-19T08:40:29.000Z",
      "arch": "x86_64",
      "commit": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
      "fileid": "bd67bb7075b0843eac5c4a717a37435787f953e7d66ceefb2ae48b0c28446ba2",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.11",
      "date": "2026-05-19T08:39:26.000Z",
      "arch": "x86_64",
      "commit": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
      "fileid": "0fce1afb925054ae32d1ff43e65a2375825d08d7df84bbd3192b454853bd8f16",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.11",
      "date": "2026-05-19T08:39:24.000Z",
      "arch": "x86_64",
      "commit": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
      "fileid": "a22a7b851bc456385956e32db452bcde177e60dbec61034a068b0b76f93ec919",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.11",
      "date": "2026-05-19T08:39:36.000Z",
      "arch": "x86_64",
      "commit": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
      "fileid": "c7012284192bf6caa769fff14716dcc441a2a07d3d5125c3a691f74adeb19a8d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.11",
      "date": "2026-06-02T14:57:33.000Z",
      "arch": "emscripten",
      "commit": "d28b4fa2fbfb249781cd9e6b4295524c3901a04e",
      "fileid": "4467c8c905461d69f38899f1414c4a7028671ad3dc2d28f9fdbf074449e131e2",
      "status": "success",
      "buildurl": "https://github.com/r-universe/sth1402/actions/runs/26085836548"
    }
  ]
}