{ "_id": "6aca6886fe5cc25786e889dd", "Package": "CONCUR", "Type": "Package", "Title": "Copy Number Profile Curve-Based Association Test", "Version": "1.5", "Date": "2025-05-03", "Author": "Amanda Brucker [aut], Shannon T. Holloway [aut, cre], Jung-Ying\nTzeng [aut]", "Authors@R": "c(person(given = \"Amanda\",\nfamily = \"Brucker\",\nrole = \"aut\"),\nperson(given = c(\"Shannon\", \"T.\"),\nfamily = \"Holloway\",\nrole = c(\"aut\", \"cre\"),\nemail = \"shannon.t.holloway@gmail.com\"),\nperson(given = \"Jung-Ying\",\nfamily = \"Tzeng\",\nrole = \"aut\"))", "Maintainer": "Shannon T. Holloway ", "Description": "Implements a kernel-based association test for copy number\nvariation (CNV) aggregate analysis in a certain genomic region\n(e.g., gene set, chromosome, or genome) that is robust to the\nwithin-locus and across-locus etiological heterogeneity, and\nbypass the need to define a \"locus\" unit for CNVs. Brucker, A.,\net al. (2020) .", "License": "GPL-2", "NeedsCompilation": "no", "Encoding": "UTF-8", "RoxygenNote": "7.1.0", "Collate": "'commonAUC.R' 'segLength.R' 'popFunc.R' 'uniqueCombinations.R'\n'createDF.R' 'deldup.R' 'CAUCkernel.R' 'cnvData.R' 'compFunc.R'\n'dataChecks.R' 'test.qt.R' 'test.bt.R' 'pv_func.R' 'concur.R'", "Packaged": { "Date": "2026-10-10 15:33:27 UTC", "User": "root" }, "Repository": "https://sth1402.r-universe.dev", "Date/Publication": "2025-05-03 18:40:02 UTC", "RemoteUrl": "https://github.com/cran/CONCUR", "RemoteRef": "HEAD", "RemoteSha": "17738d3ec6dad7e2ebbd101293085fca57249bd9", "_user": "sth1402", "_type": "src", "_file": "CONCUR_1.5.tar.gz", "_fileid": "https://r2.ropensci.org/aeb45aa2159e827fd82e96b754ff0e547b789c3af10238043c7fe5ce6252c041", "_filesize": 129228, "_sha256": "aeb45aa2159e827fd82e96b754ff0e547b789c3af10238043c7fe5ce6252c041", "_expires": "2027-01-18T16:32:04.000Z", "_created": "2026-10-10T15:33:27.000Z", "_published": "2026-10-10T16:32:06.052Z", "_buildurl": "https://github.com/r-universe/sth1402/actions/runs/38063929110", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 114248172577, "time": 123, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11674069634" }, { "job": 114248172468, "time": 110, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11674059896" }, { "job": 114248172525, "time": 164, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11675681685" }, { "job": 114248172503, "time": 104, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11675940537" }, { "job": 114247691960, "time": 144, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11674470476" }, { "job": 114248172526, "time": 80, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11674565418" }, { "job": 114248172512, "time": 90, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11674161021" }, { "job": 114248172542, "time": 84, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11674131027" }, { "job": 114248172610, "time": 85, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11674765379" } ], "_upstream": "https://github.com/cran/CONCUR", "_commit": { "id": "17738d3ec6dad7e2ebbd101293085fca57249bd9", "author": "Shannon T. Holloway ", "committer": "cran-robot ", "message": "version 1.5\n", "time": 1746297602 }, "_maintainer": { "name": "Shannon T. Holloway", "email": "shannon.t.holloway@gmail.com", "login": "sth1402", "description": "", "uuid": 41195707 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "CompQuadForm", "role": "Depends" }, { "package": "dplyr", "role": "Depends" }, { "package": "mgcv", "role": "Depends" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "sth1402", "count": 2, "uuid": 41195707 } ], "_userbio": { "uuid": 41195707, "type": "user", "name": "sth1402", "followers": 1 }, "_downloads": { "count": 457, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CONCUR" }, "_mentions": 23, "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/CONCUR.html", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt" ], "_realowner": "sth1402", "_cranurl": false, "_releases": [ { "version": "1.2", "date": "2020-03-25" }, { "version": "1.3", "date": "2020-08-06" }, { "version": "1.4", "date": "2022-06-07" }, { "version": "1.5", "date": "2025-05-03" } ], "_exports": [ "concur" ], "_datasets": [ { "name": "cnvData", "title": "Pseudo Copy Number Variants Data", "object": "cnvData", "file": "cnvData.RData", "class": [ "data.frame" ], "fields": [ "ID", "CHR", "BP1", "BP2", "TYPE" ], "rows": 803, "table": true, "tojson": true }, { "name": "covData", "title": "Pseudo Covariate Data", "object": "cnvData", "file": "cnvData.RData", "class": [ "data.frame" ], "fields": [ "ID", "SEX" ], "rows": 600, "table": true, "tojson": true }, { "name": "phenoData", "title": "Pseudo Phenotype Data", "object": "cnvData", "file": "cnvData.RData", "class": [ "data.frame" ], "fields": [ "ID", "PHEB", "PHEC" ], "rows": 600, "table": true, "tojson": true } ], "_help": [ { "page": "cnvData", "title": "Pseudo Copy Number Variants Data", "topics": [ "cnvData" ] }, { "page": "concur", "title": "Copy Number Profile Curve-Based Association Test", "topics": [ "concur" ] }, { "page": "covData", "title": "Pseudo Covariate Data", "topics": [ "covData" ] }, { "page": "phenoData", "title": "Pseudo Phenotype Data", "topics": [ "phenoData" ] } ], "_rundeps": [ "cli", "CompQuadForm", "dplyr", "generics", "glue", "lattice", "lifecycle", "magrittr", "Matrix", "mgcv", "nlme", "pillar", "pkgconfig", "R6", "rlang", "tibble", "tidyselect", "utf8", "vctrs", "withr" ], "_score": 2, "_indexed": true, "_nocasepkg": "concur", "_universes": [ "sth1402" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.5", "date": "2026-10-10T15:35:18.000Z", "distro": "resolute", "commit": "17738d3ec6dad7e2ebbd101293085fca57249bd9", "fileid": "https://r2.ropensci.org/d44c5310bdd803b625db86c6dc2aad63f1fd15934a264e6a65df2ce51b127999", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38063929110" }, { "r": "4.6.1", "os": "linux", "version": "1.5", "date": "2026-10-10T15:35:06.000Z", "distro": "resolute", "commit": "17738d3ec6dad7e2ebbd101293085fca57249bd9", "fileid": "https://r2.ropensci.org/d70aabc7b75548ef86a82e3b1147e3d7257876a6db1f1143161fe2945c0f23f1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38063929110" }, { "r": "4.5.3", "os": "mac", "version": "1.5", "date": "2026-10-10T16:31:08.000Z", "commit": "17738d3ec6dad7e2ebbd101293085fca57249bd9", "fileid": "https://r2.ropensci.org/303aa61e3585403984b2db7b2eee54336efa44c4088b17184466a756a3488750", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38063929110" }, { "r": "4.6.1", "os": "mac", "version": "1.5", "date": "2026-10-10T16:28:52.000Z", "commit": "17738d3ec6dad7e2ebbd101293085fca57249bd9", "fileid": "https://r2.ropensci.org/fe51c26e8fc9eea62cf4db4263c02e3b5eefe41d75b6c4b5bf5cb93514055685", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38063929110" }, { "r": "4.6.0", "os": "wasm", "version": "1.5", "date": "2026-10-10T15:35:04.000Z", "commit": "17738d3ec6dad7e2ebbd101293085fca57249bd9", "fileid": "https://r2.ropensci.org/09a199ef615654f0f2fe98535b084e1da20a4b8ff981211fde11c2be9f97a72e", "status": "success", "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38063929110" }, { "r": "4.7.0", "os": "win", "version": "1.5", "date": "2026-10-10T15:34:41.000Z", "commit": "17738d3ec6dad7e2ebbd101293085fca57249bd9", "fileid": "https://r2.ropensci.org/b56d56c847995763d0d85d324606a573daa429ce01a54aa2f4612a3f8ae7ebad", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38063929110" }, { "r": "4.5.3", "os": "win", "version": "1.5", "date": "2026-10-10T15:34:33.000Z", "commit": "17738d3ec6dad7e2ebbd101293085fca57249bd9", "fileid": "https://r2.ropensci.org/d0456ecde5ce99c1db294ddf46bbe9070e1a776e64e085e9194dec7c90d99fb4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38063929110" }, { "r": "4.6.1", "os": "win", "version": "1.5", "date": "2026-10-10T15:34:34.000Z", "commit": "17738d3ec6dad7e2ebbd101293085fca57249bd9", "fileid": "https://r2.ropensci.org/a25adb071855e5e504be77cc8d77184b367254c0385ba0d307714ad19e98ebc1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sth1402/actions/runs/38063929110" } ] }